Difference between revisions of "KOREF Data Download"

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<p><strong><span style="font-size:14px">KOREF_S&#39;s multi-omics data are available from ftp://Biodisk.org&nbsp;</span></strong></p>
  
<div style="font-family: Arial; color: rgb(50,51,51); padding-bottom: 0px; padding-top: 0px; padding-left: 0px; min-height: 14px; margin: 0px; line-height: normal; padding-right: 0px"><span style="font-family:arial">FTP server =&gt; </span><span style="color:rgb(136,136,136); font-family:돋움,dotum,helvetica,sans-serif"><a href="ftp://koref.biodisk.org/KOREF1.0.r20150820/" target="_self">here </a></span></div>
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<div style="font-family: Arial; color: rgb(50,51,51); padding-bottom: 0px; padding-top: 0px; padding-left: 0px; min-height: 14px; margin: 0px; line-height: normal; padding-right: 0px"><strong><span style="font-family:arial">FTP server =&gt; </span><span style="color:rgb(136,136,136); font-family:돋움,dotum,helvetica,sans-serif"><a href="ftp://koref.biodisk.org/KOREF1.0.r20150820/" target="_self">here </a></span></strong></div>
  
 
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<div style="color: rgb(50,51,51); padding-bottom: 0px; padding-top: 0px; padding-left: 0px; min-height: 14px; margin: 0px; line-height: normal; padding-right: 0px"><strong>wget ftp://koref.biodisk.org/KOREF1.0.r20150820/KOREF_Assembly/KOREF1.0.Gene.gff </strong></div>
 
<div style="color: rgb(50,51,51); padding-bottom: 0px; padding-top: 0px; padding-left: 0px; min-height: 14px; margin: 0px; line-height: normal; padding-right: 0px"><strong>wget ftp://koref.biodisk.org/KOREF1.0.r20150820/KOREF_Assembly/KOREF1.0.Gene.gff </strong></div>
  
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<div style="color: rgb(50,51,51); padding-bottom: 0px; padding-top: 0px; padding-left: 0px; min-height: 14px; margin: 0px; line-height: normal; padding-right: 0px">&nbsp;</div>
  
<div style="font-weight: normal"><span style="font-size:24pt"><span style="font-size:9pt"><strong><span style="font-size:24pt"><span style="font-size:9pt"><strong>▷ KOREF standard reference data </strong></span></span></strong></span></span></div>
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<div style="font-weight: normal"><span style="font-size:16px"><strong><strong>▷ KOREF standard reference data </strong></strong></span></div>
 
 
<div style="font-weight: normal">&nbsp;</div>
 
  
 
<div style="font-weight: normal; margin-left: 40px"><span style="font-size:24pt"><span style="font-size:9pt"><span style="font-size:24pt"><span style="font-size:9pt"><a href="ftp://koref.biodisk.org/KOREF1.0.r20150820/KOREF_StandardReferenceData/" target="_self">Download&nbsp; </a>&nbsp; -&nbsp; KOREF standard reference data </span></span></span></span></div>
 
<div style="font-weight: normal; margin-left: 40px"><span style="font-size:24pt"><span style="font-size:9pt"><span style="font-size:24pt"><span style="font-size:9pt"><a href="ftp://koref.biodisk.org/KOREF1.0.r20150820/KOREF_StandardReferenceData/" target="_self">Download&nbsp; </a>&nbsp; -&nbsp; KOREF standard reference data </span></span></span></span></div>
  
<div style="font-family: Helvetica">&nbsp;</div>
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<div style="font-family: Helvetica"><span style="font-size:16px"><strong><strong>▷ Assembly </strong></strong></span></div>
 
 
<div style="font-family: Helvetica"><span style="font-size:24pt"><span style="font-size:9pt"><strong><span style="font-size:24pt"><span style="font-size:9pt"><strong>▷ Assembly </strong></span></span></strong></span></span></div>
 
 
 
<div style="font-family: Helvetica">&nbsp;</div>
 
  
 
<div style="font-family: Helvetica; margin-left: 40px"><span style="font-size:24pt"><span style="font-size:9pt"><span style="font-size:24pt"><span style="font-size:9pt"><a href="ftp://koref.biodisk.org/KOREF1.0.r20150820/KOREF_Assembly" target="_self">Download </a>&nbsp; -&nbsp; Assembly, gene set, and repeat information </span></span></span></span></div>
 
<div style="font-family: Helvetica; margin-left: 40px"><span style="font-size:24pt"><span style="font-size:9pt"><span style="font-size:24pt"><span style="font-size:9pt"><a href="ftp://koref.biodisk.org/KOREF1.0.r20150820/KOREF_Assembly" target="_self">Download </a>&nbsp; -&nbsp; Assembly, gene set, and repeat information </span></span></span></span></div>
 
<div style="font-family: Helvetica">&nbsp;</div>
 
  
 
<div style="font-family: Helvetica"><span style="font-size:24pt"><span style="font-size:9pt"><strong>▷ Raw Sequence Data </strong></span></span></div>
 
<div style="font-family: Helvetica"><span style="font-size:24pt"><span style="font-size:9pt"><strong>▷ Raw Sequence Data </strong></span></span></div>

Revision as of 13:41, 7 September 2019

KOREF_S's multi-omics data are available from ftp://Biodisk.org 

FTP server => here

 

We suggest to use FTP tools to download the files,such as FileZilla on Windows, wget on Linux etc.
 
Example command)
 
 
▷ KOREF standard reference data
Download    -  KOREF standard reference data
▷ Assembly
Download   -  Assembly, gene set, and repeat information
▷ Raw Sequence Data
 
Download   -  DNA-Seq
 
Download   -  RNA-Seq
 
Download   -  Methyl-Seq
 
Download   -  Bisulfite-Seq
 
Download   -  Genome Mapping data (BioNano and OpGen)
 
Download   -  16 Participants' DNA-chip
 
▷ Variant
 
Download   -  Variants of 20 people that were called against GRCh38 but not KOREF.
 
Download   -  Variants of 20 people that were called against  KOREF but not GRCh38.
 
▷ Structure Variation
 
Download   -  Structure Variation that were called against GRCh38.
 
▷ Liftover Chain File 
 
Download   -  chain files for liftover. (KOREF - GRCh38)
 
▷ External Links
 
Link   -  KOREF1.0 Assembly at NCBI
 
Link   -  KOREF1.0 Raw Reads at NCBI SRA
 
Link   -  KPGP Raw Reads at NCBI SRA
 
Link   -  KPGP (The Personal Genome Project Korea)
 
Link   -  PAPGI (Pan-Asian Population Genomics Initiative)
 
 
The immortalized cell line of KOREF was deposited in the Korean Cell Line Bank (KCLB, #60211).
 
 
 
For KOREF related issues, please contact Jong Bhak, at jongbhak@genomics.org